DeepChek®-HPV is a flexible and customizable downstream analysis software able to handle sequencing data and intended to be used for performing Human Papilloma Virus (HPV) genomic data analyses and clinical interpretations.
Compatible with Electrophoresis Capillary and Next Generation Sequencing (NGS) platforms (like MiSeq, MiniSeq, Ion Torrent, PGM, S5, 454-Junior, 454-FLX…), DeepChek®-CMV stores, organizes sequencing data in a dedicated database format and performs bio-informatics analyses and clinical interpretations of L1 sequencing data. It is able to generate reports to be used either for research or for routine use.
- Supported formats: AB1, FASTA and PLAIN-TEXT for Sanger, FASTA/FASTQ (including paired sequencing), BAM/SAM for NGS covering Targeted Genes or also compatible with Whole Genome data.
- Available analyses: genotyping
- Available interpretations: cervical cancer prognosis
- Included services: updates/upgrades (quarterly releases), support, web-training, historical sequencing data import
- On-demand services: local training, integration with third-party instruments or systems, customization…
The DeepChek®-HPV software system is a secured web application which can be used through a Cloud access or locally, through pre-configured servers. It is made available with regular updates (new clinical databases, guidelines…) and quarterly upgrades (new features, modules, applications…) and can be fully integrated within the IT network of each laboratory (integration with the sequencing platform, with the Laboratory Information System – LIS, with the Hospital Information System – HIS…).
Overview of the pipeline
Characteristics and performances
Compatibility with Capillary Electrophoresis (SANGER) platforms
Compatibility with Next Generation Sequencing platforms
Validated on 454 FLX/Junior, MiSeq, MiniSeq, Ion PGM, Ion S5 and others
AB1, FASTA and PLAIN-TEXT for Sanger, FASTA/FASTQ (including paired sequencing), BAM/SAM for NGS covering Targeted Genes or also compatible with Whole Genome data
From sequencing data to report in ~2 minutes for SANGER and ~30 minutes for NGS (depending on the platform)
Cervical cancer prognosis
Clinical genotyping report (PDF), 1-page genotyping report
Unlimited updates & upgrades of the software, support, training...
Secured web platform (user restriction, access monitoring...), data export, multi-sites, unlimited number of users/analyses per site
Local servers, historical data import, integration with LIS and HIS, integration with sequencers, automation of the IT workflow, customization...
Examples of reports
Quick start guide