DeepChek®-HSV (S-18-DCHSV) is a flexible and customizable downstream analysis software able to handle sequencing data and intended to be used for performing HSV-1 and HSV-2 genomic data analyses and clinical interpretations.
Compatible with Next Generation Sequencing (NGS) platforms (like iSeq-100, MiSeq, MiniSeq, iSeq-100, 454-Junior, 454-FLX…), DeepChek®-HSV stores, organizes sequencing data in a dedicated database format and performs bio-informatics analyses and clinical interpretations of TK (UL23) and POL (UL30) sequencing data. It is able to generate reports to be used either for research or for routine use.
- Supported formats: FASTA/FASTQ (including paired sequencing), BAM/SAM for NGS covering Targeted Genes or also compatible with Whole Genome data.
- Available analyses: subtyping/high-resolution subtyping of Pure or CRFs strains, amino-acid mutations/nucleotide changes determination and validation, NGS coverage validation
- Available interpretations: drug resistance interpretation from several up-to-date guidelines (Universitäts Jena)
- Included services: updates/upgrades (quarterly releases), support, web-training, historical sequencing data import
- On-demand services: local training, integration with third-party instruments or systems, customization…
The DeepChek®-HSV software system is a secured web application which can be used through a Cloud access or locally, through pre-configured servers. It is made available with regular updates (new clinical databases, guidelines…) and quarterly upgrades (new features, modules, applications…) and can be fully integrated within the IT network of each laboratory (integration with the sequencing platform, with the Laboratory Information System – LIS, with the Hospital Information System – HIS…).
The DeepChek®-HSV software application is CE-IVD (LU/CA01/IVD/69).
Overview of the pipeline
Characteristics and performances
Compatibility with Next Generation Sequencing platforms
FASTA/FASTQ (including paired sequencing), BAM/SAM for NGS covering Targeted Genes or also compatible with Whole Genome data
From sequencing data to report in ~30 minutes for NGS (depending on the platform)
Amino-acid mutations detection, nucleotide changes detection, NGS run quality report
Drug resistance through different up-to-date guidelines
Clinical genotyping report (PDF), 1-page genotyping report (soon), quality-information report on Amino-Acid changes (CSV), Quality information report on nucleotide changes (CSV)
Unlimited updates & upgrades of the software, support, training...
Secured web platform (user restriction, access monitoring...), data export, multi-sites, unlimited number of users/analyses per site
Local servers, historical data import, integration with LIS and HIS, integration with sequencers, automation of the IT workflow, customization...
Examples of reports